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K-Dense Analyst: Towards Fully Automated Scientific Analysis
The complexity of modern bioinformatics analysis has created a critical gap between data generation and developing scientific insights.
Aug 09,2025
The Limitations of TabPFN for High-Dimensional RNA-seq Analysis
Tabular Prior-Data Fitted Networks (TabPFN) demonstrate remarkable performance on small-to-medium tabular datasets through in-context learning, but struggle with high-dimensional genomic data such as RNA-seq with tens of thousands of features.
Aug 21,2025
Transfer learning of Gene Expression using Reactome
A study comparing gene expression across species, showing structural similarity doesn’t predict drug response.
Apr 02,2024
Gene Expression Reactome Across Species Do Not Correlate With Gene Structural Similarity
A cross-species study revealing that gene expression responses to drugs do not align with protein structural similarity.
Feb 23,2024
Bioformers: A Scalable Framework For Exploring Biostate Using Transformers
A transformer-based model for interpreting complex biological states and gene expression patterns.
Dec 01,2023
High Frequency Longitudinal RNASeq Reveals Temporally Varying Genes and Recovery Trajectories in Rats
A study on temporal gene expression and recovery trajectories in drug-treated rats using longitudinal RNAseq.
Nov 21,2023