Our Publications
Advancing scientific understanding through evidence-based research
and collaborative innovation.
Featured Publications
A curated selection of our most impactful and widely recognized research.
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Implanted biomaterials
Screening hydrogels for antifibrotic properties by implanting cellularly barcoded alginates in mice and a non-human primate
Nature Biomedical Engineering｜Apr 27, 2023
Read Full ArticleCardiovascular HealthDeep WGS Analysis
Whole genome sequence analysis of blood lipid levels in > 66,000 individuals
Nature Communications｜Oct 11, 2022
Read Full ArticleAlgorithm-Driven DesignMultiplex Diagnostics
Designing highly multiplex PCR primer sets with simulated annealing design using dimer likelihood estimation (SADDLE)
Nature Communications｜Apr 11, 2022
Read Full ArticleMolecular BarcodingPrecision Oncology
Ensemble of nucleic acid absolute quantitation modules for copy number variation detection and RNA profiling
Nature Communications｜Apr 04, 2022
Read Full ArticleCell Biology
Clinically translatable cytokine delivery platform for eradication of intraperitoneal tumors
Science Advances｜Mar 02, 2022
Read Full ArticleLiquid BiopsyMolecular Diagnostics
Limitations and opportunities of technologies for the analysis of cell-free DNA in cancer diagnostics
Nature Biomedical Engineering｜Jan 31, 2022
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Browse our full collection of published research and papers.
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Probabilistic Alignment
Failure to Mix: Large language models struggle to answer according to desired probability distributions
arxiv｜Nov 18, 2025
Read Full ArticleBiological world model
GeneJepa: A Predictive World Model of the Transcriptome
bioRxiv｜Oct 15, 2025
Read Full ArticleEpigenetic RejuvenationGenerative Flow Models
Revive-Flow: A Foundation Model for Blood DNAm Aging
bioRxiv｜Sep 21, 2025
Read Full ArticleAI-Guided Discovery
Guided multi-agent AI invents highly accurate, uncertainty-aware transcriptomic aging clocks
bioRxiv｜Sep 12, 2025
Read Full ArticleHigh-Dimensional GenomicsModel Benchmarking
The Limitations of TabPFN for High-Dimensional RNA-seq Analysis
bioRxiv｜Aug 21, 2025
Read Full ArticleAutonomous Computational Biologist
K-Dense Analyst: Towards Fully Automated Scientific Analysis
arXiv｜Aug 09, 2025
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